IL_8UIK_086

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8UIK|1|L5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_086 not in the Motif Atlas

Homologous match to IL_8CRE_059

Geometric discrepancy: 0.1744

The information below is about IL_8CRE_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8UIK|1|L5|G|2001
8UIK|1|L5|A|2002
8UIK|1|L5|G|2003
8UIK|1|L5|U|2004
8UIK|1|L5|G|2005
*
8UIK|1|L5|C|2014
8UIK|1|L5|U|2015
8UIK|1|L5|C|2016

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12