IL_8UIK_088
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAGUCGAGAGUGGACGGGAGCGGC*GAGCCCCGCGGACGCUACG
- Length
- 43 nucleotides
- Bulged bases
- 8UIK|1|L5|G|2096, 8UIK|1|L5|U|2097, 8UIK|1|L5|G|2103, 8UIK|1|L5|A|2253, 8UIK|1|L5|G|2254, 8UIK|1|L5|C|2255, 8UIK|1|L5|C|2257, 8UIK|1|L5|C|2266, 8UIK|1|L5|U|2267, 8UIK|1|L5|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UIK|1|L5|C|2087
8UIK|1|L5|A|2088
8UIK|1|L5|G|2089
8UIK|1|L5|U|2090
8UIK|1|L5|C|2091
8UIK|1|L5|G|2092
8UIK|1|L5|A|2093
8UIK|1|L5|G|2094
8UIK|1|L5|A|2095
8UIK|1|L5|G|2096
8UIK|1|L5|U|2097
8UIK|1|L5|G|2098
8UIK|1|L5|G|2099
8UIK|1|L5|A|2100
8UIK|1|L5|C|2101
8UIK|1|L5|G|2102
8UIK|1|L5|G|2103
8UIK|1|L5|G|2104
8UIK|1|L5|A|2105
8UIK|1|L5|G|2106
8UIK|1|L5|C|2107
8UIK|1|L5|G|2108
8UIK|1|L5|G|2109
8UIK|1|L5|C|2110
*
8UIK|1|L5|G|2252
8UIK|1|L5|A|2253
8UIK|1|L5|G|2254
8UIK|1|L5|C|2255
8UIK|1|L5|C|2256
8UIK|1|L5|C|2257
8UIK|1|L5|C|2258
8UIK|1|L5|G|2259
8UIK|1|L5|C|2260
8UIK|1|L5|G|2261
8UIK|1|L5|G|2262
8UIK|1|L5|A|2263
8UIK|1|L5|C|2264
8UIK|1|L5|G|2265
8UIK|1|L5|C|2266
8UIK|1|L5|U|2267
8UIK|1|L5|A|2268
8UIK|1|L5|C|2269
8UIK|1|L5|G|2270
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lr
- 60S ribosomal protein L28
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