IL_8UIK_111

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8UIK|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_111 not in the Motif Atlas

Homologous match to IL_8CRE_084

Geometric discrepancy: 0.086

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8UIK|1|L5|C|2867
8UIK|1|L5|G|2868
8UIK|1|L5|U|2869
8UIK|1|L5|A|2870
8UIK|1|L5|A|2871
8UIK|1|L5|C|2872
*
8UIK|1|L5|G|2877
8UIK|1|L5|G|2878
8UIK|1|L5|A|2879
8UIK|1|L5|U|2880
8UIK|1|L5|A|2881
8UIK|1|L5|A|2882
8UIK|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA