IL_8UIK_124

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8UIK|1|L5|A|3785, 8UIK|1|L5|C|3791, 8UIK|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_124 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0723

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8UIK|1|L5|C|3781
8UIK|1|L5|C|3782
8UIK|1|L5|A|3783
8UIK|1|L5|A|3784
8UIK|1|L5|A|3785
8UIK|1|L5|U|3786
8UIK|1|L5|G|3787
8UIK|1|L5|C|3788
8UIK|1|L5|C|3789
8UIK|1|L5|U|3790
8UIK|1|L5|C|3791
8UIK|1|L5|G|3792
*
8UIK|1|L5|C|3808
8UIK|1|L5|G|3809
8UIK|1|L5|C|3810
8UIK|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA