IL_8UIK_126

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8UIK|1|L5|A|3901, 8UIK|1|L5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_126 not in the Motif Atlas

Homologous match to IL_8CRE_097

Geometric discrepancy: 0.0678

The information below is about IL_8CRE_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8UIK|1|L5|G|3900
8UIK|1|L5|A|3901
8UIK|1|L5|A|3902
*
8UIK|1|L5|U|4558
8UIK|1|L5|A|4559
8UIK|1|L5|C|4560
8UIK|1|L5|C|4561

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17