IL_8UIK_145

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|L5|C|4466
8UIK|1|L5|A|4467
8UIK|1|L5|U|4468
8UIK|1|L5|U|4469
8UIK|1|L5|G|4470
*
8UIK|1|L5|C|4485
8UIK|1|L5|C|4486
8UIK|1|L5|A|4487
8UIK|1|L5|A|4488
8UIK|1|L5|G|4489
8UIK|1|L5|C|4490
8UIK|1|L5|G|4491

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23

Chain Lm

Large ribosomal subunit protein eL40