IL_8UIK_171

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

8UIK|1|L5|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|L5|U|5003
8UIK|1|L5|C|5004
8UIK|1|L5|G|5005
8UIK|1|L5|U|5006
8UIK|1|L5|A|5007
8UIK|1|L5|C|5008
8UIK|1|L5|G|5009
*
8UIK|1|L5|U|5039
8UIK|1|L5|U|5040
8UIK|1|L5|G|5041
8UIK|1|L5|A|5042
8UIK|1|L5|A|5043
8UIK|1|L5|A|5044

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

Ribosomal protein L24

Chain Ld

60S ribosomal protein L31