IL_8UIK_192
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UIK_192 not in the Motif Atlas
- Homologous match to IL_8CRE_399
- Geometric discrepancy: 0.1942
- The information below is about IL_8CRE_399
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UIK|1|S2|U|116
8UIK|1|S2|C|117
8UIK|1|S2|C|118
8UIK|1|S2|U|119
8UIK|1|S2|U|120
8UIK|1|S2|U|121
*
8UIK|1|S2|A|343
8UIK|1|S2|U|344
8UIK|1|S2|U|345
8UIK|1|S2|C|346
8UIK|1|S2|G|347
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SI
- 40S ribosomal protein S8
Coloring options: