IL_8UIK_197

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_197 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.2848

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8UIK|1|S2|C|188
8UIK|1|S2|U|189
8UIK|1|S2|G|190
8UIK|1|S2|A|191
8UIK|1|S2|C|192
*
8UIK|1|S2|G|207
8UIK|1|S2|G|208
8UIK|1|S2|A|209
8UIK|1|S2|U|210
8UIK|1|S2|G|211

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8