IL_8UIK_204
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 8UIK|1|S2|U|428
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UIK_204 not in the Motif Atlas
- Homologous match to IL_8CRE_410
- Geometric discrepancy: 0.2678
- The information below is about IL_8CRE_410
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93336.1
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UIK|1|S2|G|411
8UIK|1|S2|G|412
8UIK|1|S2|G|413
*
8UIK|1|S2|C|424
8UIK|1|S2|G|425
8UIK|1|S2|A|426
8UIK|1|S2|U|427
8UIK|1|S2|U|428
8UIK|1|S2|C|429
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
Coloring options: