IL_8UIK_212

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

8UIK|1|S2|A|536, 8UIK|1|S2|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_212 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1669

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UIK|1|S2|G|535
8UIK|1|S2|A|536
8UIK|1|S2|C|537
*
8UIK|1|S2|G|546
8UIK|1|S2|G|547
8UIK|1|S2|C|548

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

Small ribosomal subunit protein eS30