IL_8UIK_218

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8UIK|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_218 not in the Motif Atlas

Homologous match to IL_8CRE_424

Geometric discrepancy: 0.1165

The information below is about IL_8CRE_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8UIK|1|S2|G|665
8UIK|1|S2|U|666
8UIK|1|S2|U|667
8UIK|1|S2|A|668
8UIK|1|S2|A|669
8UIK|1|S2|A|670
8UIK|1|S2|A|671
*
8UIK|1|S2|U|1161
8UIK|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26