IL_8UIK_227

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8UIK|1|S2|U|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_227 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.1758

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8UIK|1|S2|G|925
8UIK|1|S2|A|926
*
8UIK|1|S2|U|1015
8UIK|1|S2|U|1016
8UIK|1|S2|U|1017

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S15a

Chain Sb

Small ribosomal subunit protein eS27