IL_8UIK_237

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_237 not in the Motif Atlas

Geometric match to IL_8P9A_401

Geometric discrepancy: 0.2057

The information below is about IL_8P9A_401

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8UIK|1|S2|G|1108
8UIK|1|S2|C|1109
8UIK|1|S2|G|1110
*
8UIK|1|S2|C|1123
8UIK|1|S2|C|1124

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SB

40S ribosomal protein S3a

Chain SR

40S ribosomal protein S17

Chain Sb

Small ribosomal subunit protein eS27