IL_8UIK_277

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGGG*CCCUGG

Length

10 nucleotides

Bulged bases

8UIK|1|S2|G|1758, 8UIK|1|S2|C|1773, 8UIK|1|S2|C|1774

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|S2|C|1756
8UIK|1|S2|G|1757
8UIK|1|S2|G|1758
8UIK|1|S2|G|1759
*
8UIK|1|S2|C|1772
8UIK|1|S2|C|1773
8UIK|1|S2|C|1774
8UIK|1|S2|U|1775
8UIK|1|S2|G|1776
8UIK|1|S2|G|1777

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6