IL_8UIY_003

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIY_003 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.0959

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8UIY|1|L5|G|16
8UIY|1|L5|A|17
8UIY|1|L5|C|18
*
8UIY|1|L8|G|139
8UIY|1|L8|C|140
8UIY|1|L8|C|141

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA [Homo sapiens]

Nearby chains

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lh

60S ribosomal protein L35