IL_8UIY_033

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

8UIY|1|L5|G|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIY_033 not in the Motif Atlas

Geometric match to IL_6CZR_148

Geometric discrepancy: 0.2514

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

8UIY|1|L5|C|709
8UIY|1|L5|G|710
*
8UIY|1|L5|C|1286
8UIY|1|L5|G|1287
8UIY|1|L5|G|1288

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lf

60S ribosomal protein L35a