IL_8UIY_077

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

ACU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIY_077 not in the Motif Atlas

Homologous match to IL_8P9A_274

Geometric discrepancy: 0.1229

The information below is about IL_8P9A_274

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8UIY|1|L5|A|1858
8UIY|1|L5|C|1859
8UIY|1|L5|U|1860
*
8UIY|1|L5|A|1874
8UIY|1|L5|C|1875
8UIY|1|L5|U|1876

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein L7

Chain Lb

Large ribosomal subunit protein eL29