IL_8UIY_151

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8UIY|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIY_151 not in the Motif Atlas

Geometric match to IL_6YML_002

Geometric discrepancy: 0.346

The information below is about IL_6YML_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8UIY|1|L5|C|4582
8UIY|1|L5|C|4583
8UIY|1|L5|A|4584
8UIY|1|L5|U|4585
*
8UIY|1|L5|A|4717
8UIY|1|L5|G|4718
8UIY|1|L5|G|4719
8UIY|1|L5|C|4720
8UIY|1|L5|G|4721

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a