IL_8UIY_199

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIY_199 not in the Motif Atlas

Homologous match to IL_8P9A_384

Geometric discrepancy: 0.486

The information below is about IL_8P9A_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23751.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8UIY|1|S2|U|152
8UIY|1|S2|G|153
8UIY|1|S2|U|154
*
8UIY|1|S2|A|164
8UIY|1|S2|G|165
8UIY|1|S2|A|166

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24