IL_8UIY_213

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

8UIY|1|S2|U|556

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIY_213 not in the Motif Atlas

Geometric match to IL_1SI3_001

Geometric discrepancy: 0.2413

The information below is about IL_1SI3_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_23751.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8UIY|1|S2|A|528
8UIY|1|S2|A|529
8UIY|1|S2|U|530
*
8UIY|1|S2|A|554
8UIY|1|S2|A|555
8UIY|1|S2|U|556
8UIY|1|S2|U|557

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain Se

Small ribosomal subunit protein eS30