3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
GCCCGG*UCC
Length
9 nucleotides
Bulged bases
8UIZ|1|L5|C|501, 8UIZ|1|L5|C|502, 8UIZ|1|L5|C|503, 8UIZ|1|L5|G|504
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_026 not in the Motif Atlas
Geometric match to IL_7KGA_003
Geometric discrepancy: 0.3685
The information below is about IL_7KGA_003
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

8UIZ|1|L5|G|500
8UIZ|1|L5|C|501
8UIZ|1|L5|C|502
8UIZ|1|L5|C|503
8UIZ|1|L5|G|504
8UIZ|1|L5|G|505
*
8UIZ|1|L5|U|653
8UIZ|1|L5|C|654
8UIZ|1|L5|C|655

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LQ
60S ribosomal protein L18

Coloring options:


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