IL_8UIZ_081

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8UIZ|1|L5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIZ_081 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.1701

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8UIZ|1|L5|G|2001
8UIZ|1|L5|A|2002
8UIZ|1|L5|G|2003
8UIZ|1|L5|U|2004
8UIZ|1|L5|G|2005
*
8UIZ|1|L5|C|2014
8UIZ|1|L5|U|2015
8UIZ|1|L5|C|2016

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11