3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
CAGUCGAGAGUGGACGGGAGCGGC*GAGCCCCGCGGACGCUACG
Length
43 nucleotides
Bulged bases
8UIZ|1|L5|G|2096, 8UIZ|1|L5|U|2097, 8UIZ|1|L5|C|2255, 8UIZ|1|L5|C|2266, 8UIZ|1|L5|U|2267, 8UIZ|1|L5|C|2269
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UIZ|1|L5|C|2087
8UIZ|1|L5|A|2088
8UIZ|1|L5|G|2089
8UIZ|1|L5|U|2090
8UIZ|1|L5|C|2091
8UIZ|1|L5|G|2092
8UIZ|1|L5|A|2093
8UIZ|1|L5|G|2094
8UIZ|1|L5|A|2095
8UIZ|1|L5|G|2096
8UIZ|1|L5|U|2097
8UIZ|1|L5|G|2098
8UIZ|1|L5|G|2099
8UIZ|1|L5|A|2100
8UIZ|1|L5|C|2101
8UIZ|1|L5|G|2102
8UIZ|1|L5|G|2103
8UIZ|1|L5|G|2104
8UIZ|1|L5|A|2105
8UIZ|1|L5|G|2106
8UIZ|1|L5|C|2107
8UIZ|1|L5|G|2108
8UIZ|1|L5|G|2109
8UIZ|1|L5|C|2110
*
8UIZ|1|L5|G|2252
8UIZ|1|L5|A|2253
8UIZ|1|L5|G|2254
8UIZ|1|L5|C|2255
8UIZ|1|L5|C|2256
8UIZ|1|L5|C|2257
8UIZ|1|L5|C|2258
8UIZ|1|L5|G|2259
8UIZ|1|L5|C|2260
8UIZ|1|L5|G|2261
8UIZ|1|L5|G|2262
8UIZ|1|L5|A|2263
8UIZ|1|L5|C|2264
8UIZ|1|L5|G|2265
8UIZ|1|L5|C|2266
8UIZ|1|L5|U|2267
8UIZ|1|L5|A|2268
8UIZ|1|L5|C|2269
8UIZ|1|L5|G|2270

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LE
Large ribosomal subunit protein eL6
Chain LF
60S ribosomal protein L7
Chain LQ
60S ribosomal protein L18
Chain Lb
Large ribosomal subunit protein eL29
Chain Lr
60S ribosomal protein L28

Coloring options:

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