IL_8UIZ_105

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8UIZ|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIZ_105 not in the Motif Atlas

Homologous match to IL_8CRE_083

Geometric discrepancy: 0.0707

The information below is about IL_8CRE_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8UIZ|1|L5|A|2850
8UIZ|1|L5|G|2851
8UIZ|1|L5|U|2852
8UIZ|1|L5|C|2853
8UIZ|1|L5|G|2854
8UIZ|1|L5|G|2855
*
8UIZ|1|L5|C|3837
8UIZ|1|L5|U|3838
8UIZ|1|L5|G|3839
8UIZ|1|L5|U|3840

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23