3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
CGUAAC*GGAUAAG
Length
13 nucleotides
Bulged bases
8UIZ|1|L5|U|2880
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_106 not in the Motif Atlas
Homologous match to IL_8CRE_084
Geometric discrepancy: 0.0801
The information below is about IL_8CRE_084
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8UIZ|1|L5|C|2867
8UIZ|1|L5|G|2868
8UIZ|1|L5|U|2869
8UIZ|1|L5|A|2870
8UIZ|1|L5|A|2871
8UIZ|1|L5|C|2872
*
8UIZ|1|L5|G|2877
8UIZ|1|L5|G|2878
8UIZ|1|L5|A|2879
8UIZ|1|L5|U|2880
8UIZ|1|L5|A|2881
8UIZ|1|L5|A|2882
8UIZ|1|L5|G|2883

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Ln
60S ribosomal protein L41
Chain Lp
60S ribosomal protein L37a
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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