IL_8UIZ_119

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8UIZ|1|L5|A|3785, 8UIZ|1|L5|C|3791, 8UIZ|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIZ_119 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0751

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8UIZ|1|L5|C|3781
8UIZ|1|L5|C|3782
8UIZ|1|L5|A|3783
8UIZ|1|L5|A|3784
8UIZ|1|L5|A|3785
8UIZ|1|L5|U|3786
8UIZ|1|L5|G|3787
8UIZ|1|L5|C|3788
8UIZ|1|L5|C|3789
8UIZ|1|L5|U|3790
8UIZ|1|L5|C|3791
8UIZ|1|L5|G|3792
*
8UIZ|1|L5|C|3808
8UIZ|1|L5|G|3809
8UIZ|1|L5|C|3810
8UIZ|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA