3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
CCAAAUGCCUCG*CGCG
Length
16 nucleotides
Bulged bases
8UIZ|1|L5|A|3785, 8UIZ|1|L5|C|3791, 8UIZ|1|L5|C|3810
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_119 not in the Motif Atlas
Homologous match to IL_8CRE_095
Geometric discrepancy: 0.0751
The information below is about IL_8CRE_095
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

8UIZ|1|L5|C|3781
8UIZ|1|L5|C|3782
8UIZ|1|L5|A|3783
8UIZ|1|L5|A|3784
8UIZ|1|L5|A|3785
8UIZ|1|L5|U|3786
8UIZ|1|L5|G|3787
8UIZ|1|L5|C|3788
8UIZ|1|L5|C|3789
8UIZ|1|L5|U|3790
8UIZ|1|L5|C|3791
8UIZ|1|L5|G|3792
*
8UIZ|1|L5|C|3808
8UIZ|1|L5|G|3809
8UIZ|1|L5|C|3810
8UIZ|1|L5|G|3811

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Ln
60S ribosomal protein L41
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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