3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
GG*UCC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_132 not in the Motif Atlas
Homologous match to IL_8P9A_329
Geometric discrepancy: 0.0821
The information below is about IL_8P9A_329
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.7
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
40

Unit IDs

8UIZ|1|L5|G|4400
8UIZ|1|L5|G|4401
*
8UIZ|1|L5|U|4442
8UIZ|1|L5|C|4443
8UIZ|1|L5|C|4444

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LI
Ribosomal protein uL16-like
Chain Lb
Large ribosomal subunit protein eL29

Coloring options:


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