3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
CUCAGUAC*GGAACCG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_148 not in the Motif Atlas
Homologous match to IL_8CRE_125
Geometric discrepancy: 0.0751
The information below is about IL_8CRE_125
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8UIZ|1|L5|C|4596
8UIZ|1|L5|U|4597
8UIZ|1|L5|C|4598
8UIZ|1|L5|A|4599
8UIZ|1|L5|G|4600
8UIZ|1|L5|U|4601
8UIZ|1|L5|A|4602
8UIZ|1|L5|C|4603
*
8UIZ|1|L5|G|4608
8UIZ|1|L5|G|4609
8UIZ|1|L5|A|4610
8UIZ|1|L5|A|4611
8UIZ|1|L5|C|4612
8UIZ|1|L5|C|4613
8UIZ|1|L5|G|4614

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LH
60S ribosomal protein L9
Chain LV
60S ribosomal protein L23
Chain Lm
Large ribosomal subunit protein eL40

Coloring options:


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