IL_8UIZ_175
3D structure
- PDB id
- 8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UIZ_175 not in the Motif Atlas
- Homologous match to IL_8OI5_139
- Geometric discrepancy: 0.2832
- The information below is about IL_8OI5_139
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8UIZ|1|L7|G|71
8UIZ|1|L7|U|72
8UIZ|1|L7|U|73
8UIZ|1|L7|A|74
8UIZ|1|L7|G|75
8UIZ|1|L7|U|76
8UIZ|1|L7|A|77
8UIZ|1|L7|C|78
*
8UIZ|1|L7|G|98
8UIZ|1|L7|G|99
8UIZ|1|L7|A|100
8UIZ|1|L7|A|101
8UIZ|1|L7|U|102
8UIZ|1|L7|A|103
8UIZ|1|L7|C|104
Current chains
- Chain L7
- 5S rRNA [Homo sapiens]
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LF
- 60S ribosomal protein L7
- Chain LI
- Ribosomal protein uL16-like
- Chain LS
- 60S ribosomal protein L18a
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