3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
GUUAAAA*UC
Length
9 nucleotides
Bulged bases
8UIZ|1|S2|A|668
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_216 not in the Motif Atlas
Homologous match to IL_8CRE_424
Geometric discrepancy: 0.1021
The information below is about IL_8CRE_424
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_20847.1
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
5

Unit IDs

8UIZ|1|S2|G|665
8UIZ|1|S2|U|666
8UIZ|1|S2|U|667
8UIZ|1|S2|A|668
8UIZ|1|S2|A|669
8UIZ|1|S2|A|670
8UIZ|1|S2|A|671
*
8UIZ|1|S2|U|1161
8UIZ|1|S2|C|1162

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SC
40S ribosomal protein S2
Chain SX
40S ribosomal protein S23
Chain Sa
40S ribosomal protein S26

Coloring options:


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