IL_8UIZ_223

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIZ_223 not in the Motif Atlas

Geometric match to IL_8P9A_408

Geometric discrepancy: 0.1656

The information below is about IL_8P9A_408

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8UIZ|1|S2|C|877
8UIZ|1|S2|G|878
8UIZ|1|S2|C|879
*
8UIZ|1|S2|G|907
8UIZ|1|S2|A|908
8UIZ|1|S2|G|909

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SH

Small ribosomal subunit protein eS7