3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
CGC*GAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_223 not in the Motif Atlas
Geometric match to IL_8P9A_408
Geometric discrepancy: 0.1656
The information below is about IL_8P9A_408
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_23751.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
5

Unit IDs

8UIZ|1|S2|C|877
8UIZ|1|S2|G|878
8UIZ|1|S2|C|879
*
8UIZ|1|S2|G|907
8UIZ|1|S2|A|908
8UIZ|1|S2|G|909

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain LR
60S ribosomal protein L19
Chain SH
Small ribosomal subunit protein eS7

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0783 s