IL_8UIZ_247

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8UIZ|1|S2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIZ_247 not in the Motif Atlas

Homologous match to IL_8CRE_451

Geometric discrepancy: 0.1044

The information below is about IL_8CRE_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8UIZ|1|S2|G|1325
8UIZ|1|S2|U|1326
8UIZ|1|S2|G|1327
*
8UIZ|1|S2|C|1502
8UIZ|1|S2|C|1503

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29