3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
GCUCAGCGUG*CCGUUGAACCC
Length
21 nucleotides
Bulged bases
8UIZ|1|S2|U|1585, 8UIZ|1|S2|G|1587
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UIZ|1|S2|G|1541
8UIZ|1|S2|C|1542
8UIZ|1|S2|U|1543
8UIZ|1|S2|C|1544
8UIZ|1|S2|A|1545
8UIZ|1|S2|G|1546
8UIZ|1|S2|C|1547
8UIZ|1|S2|G|1548
8UIZ|1|S2|U|1549
8UIZ|1|S2|G|1550
*
8UIZ|1|S2|C|1582
8UIZ|1|S2|C|1583
8UIZ|1|S2|G|1584
8UIZ|1|S2|U|1585
8UIZ|1|S2|U|1586
8UIZ|1|S2|G|1587
8UIZ|1|S2|A|1588
8UIZ|1|S2|A|1589
8UIZ|1|S2|C|1590
8UIZ|1|S2|C|1591
8UIZ|1|S2|C|1592

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SD
Small ribosomal subunit protein uS3
Chain SF
40S ribosomal protein S5
Chain SQ
Small ribosomal subunit protein uS9
Chain ST
40S ribosomal protein S19
Chain SU
40S ribosomal protein S20
Chain SZ
Small ribosomal subunit protein eS25
Chain Sd
40S ribosomal protein S29

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