3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
UUG*CUA
Length
6 nucleotides
Bulged bases
8UIZ|1|S2|U|1721, 8UIZ|1|S2|U|1812
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_269 not in the Motif Atlas
Homologous match to IL_8P9A_458
Geometric discrepancy: 0.3455
The information below is about IL_8P9A_458
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_97561.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
129

Unit IDs

8UIZ|1|S2|U|1720
8UIZ|1|S2|U|1721
8UIZ|1|S2|G|1722
*
8UIZ|1|S2|C|1811
8UIZ|1|S2|U|1812
8UIZ|1|S2|A|1813

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LV
60S ribosomal protein L23
Chain Ln
60S ribosomal protein L41
Chain SX
40S ribosomal protein S23

Coloring options:


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