IL_8UJ9_006
3D structure
- PDB id
- 8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJ9_006 not in the Motif Atlas
- Homologous match to IL_8P9A_235
- Geometric discrepancy: 0.1042
- The information below is about IL_8P9A_235
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_53348.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8UJ9|1|L5|C|81
8UJ9|1|L5|U|82
8UJ9|1|L5|C|83
8UJ9|1|L5|A|84
8UJ9|1|L5|G|85
8UJ9|1|L5|U|86
8UJ9|1|L5|A|87
8UJ9|1|L5|A|88
*
8UJ9|1|L5|U|96
8UJ9|1|L5|G|97
8UJ9|1|L5|A|98
8UJ9|1|L5|A|99
8UJ9|1|L5|C|100
8UJ9|1|L5|A|101
8UJ9|1|L5|G|102
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- 60S ribosomal protein L36a
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