IL_8UJ9_020

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_020 not in the Motif Atlas

Geometric match to IL_1SI3_001

Geometric discrepancy: 0.1772

The information below is about IL_1SI3_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_23751.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8UJ9|1|L5|G|462
8UJ9|1|L5|A|463
8UJ9|1|L5|G|464
*
8UJ9|1|L5|C|691
8UJ9|1|L5|A|692
8UJ9|1|L5|C|693

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28