IL_8UJ9_083

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8UJ9|1|L5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_083 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.1735

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8UJ9|1|L5|G|2001
8UJ9|1|L5|A|2002
8UJ9|1|L5|G|2003
8UJ9|1|L5|U|2004
8UJ9|1|L5|G|2005
*
8UJ9|1|L5|C|2014
8UJ9|1|L5|U|2015
8UJ9|1|L5|C|2016

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11