IL_8UJ9_087

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

8UJ9|1|L5|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_087 not in the Motif Atlas

Homologous match to IL_8CRE_062

Geometric discrepancy: 0.5864

The information below is about IL_8CRE_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8UJ9|1|L5|G|2299
8UJ9|1|L5|A|2300
8UJ9|1|L5|G|2301
*
8UJ9|1|L5|C|2334
8UJ9|1|L5|C|2335

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain Le

60S ribosomal protein L32

Chain Lr

60S ribosomal protein L28