IL_8UJ9_089

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8UJ9|1|L5|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_089 not in the Motif Atlas

Homologous match to IL_8P9A_288

Geometric discrepancy: 0.5387

The information below is about IL_8P9A_288

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8UJ9|1|L5|U|2312
8UJ9|1|L5|A|2313
8UJ9|1|L5|G|2314
*
8UJ9|1|L5|C|2325
8UJ9|1|L5|G|2326

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Le

60S ribosomal protein L32