IL_8UJ9_108

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8UJ9|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_108 not in the Motif Atlas

Homologous match to IL_8CRE_084

Geometric discrepancy: 0.0726

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8UJ9|1|L5|C|2867
8UJ9|1|L5|G|2868
8UJ9|1|L5|U|2869
8UJ9|1|L5|A|2870
8UJ9|1|L5|A|2871
8UJ9|1|L5|C|2872
*
8UJ9|1|L5|G|2877
8UJ9|1|L5|G|2878
8UJ9|1|L5|A|2879
8UJ9|1|L5|U|2880
8UJ9|1|L5|A|2881
8UJ9|1|L5|A|2882
8UJ9|1|L5|G|2883

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA