IL_8UJ9_111

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGGUCG*CGGCCGGCGCCUAGC

Length

21 nucleotides

Bulged bases

8UJ9|1|L5|G|2902, 8UJ9|1|L5|G|2903, 8UJ9|1|L5|C|3594, 8UJ9|1|L5|U|3595, 8UJ9|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJ9|1|L5|G|2901
8UJ9|1|L5|G|2902
8UJ9|1|L5|G|2903
8UJ9|1|L5|U|2904
8UJ9|1|L5|C|2905
8UJ9|1|L5|G|2906
*
8UJ9|1|L5|C|3584
8UJ9|1|L5|G|3585
8UJ9|1|L5|G|3586
8UJ9|1|L5|C|3587
8UJ9|1|L5|C|3588
8UJ9|1|L5|G|3589
8UJ9|1|L5|G|3590
8UJ9|1|L5|C|3591
8UJ9|1|L5|G|3592
8UJ9|1|L5|C|3593
8UJ9|1|L5|C|3594
8UJ9|1|L5|U|3595
8UJ9|1|L5|A|3596
8UJ9|1|L5|G|3597
8UJ9|1|L5|C|3598

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11