IL_8UJ9_113

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8UJ9|1|L5|A|3663, 8UJ9|1|L5|U|3679, 8UJ9|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_113 not in the Motif Atlas

Homologous match to IL_8CRE_088

Geometric discrepancy: 0.0923

The information below is about IL_8CRE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20047.1

Basepair signature

cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UJ9|1|L5|C|3660
8UJ9|1|L5|G|3661
8UJ9|1|L5|A|3662
8UJ9|1|L5|A|3663
8UJ9|1|L5|G|3664
8UJ9|1|L5|G|3665
*
8UJ9|1|L5|U|3677
8UJ9|1|L5|G|3678
8UJ9|1|L5|U|3679
8UJ9|1|L5|U|3680
8UJ9|1|L5|G|3681
8UJ9|1|L5|A|3682
8UJ9|1|L5|C|3683
8UJ9|1|L5|G|3684

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA