IL_8UJ9_132

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_132 not in the Motif Atlas

Homologous match to IL_8P9A_329

Geometric discrepancy: 0.1135

The information below is about IL_8P9A_329

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8UJ9|1|L5|G|4400
8UJ9|1|L5|G|4401
*
8UJ9|1|L5|U|4442
8UJ9|1|L5|C|4443
8UJ9|1|L5|C|4444

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LI

Ribosomal protein uL16-like

Chain Lb

Large ribosomal subunit protein eL29