IL_8UJ9_136
3D structure
- PDB id
- 8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJ9_136 not in the Motif Atlas
- Homologous match to IL_8P9A_333
- Geometric discrepancy: 0.1146
- The information below is about IL_8P9A_333
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8UJ9|1|L5|C|4412
8UJ9|1|L5|C|4413
8UJ9|1|L5|A|4414
8UJ9|1|L5|A|4415
8UJ9|1|L5|G|4416
*
8UJ9|1|L5|C|4426
8UJ9|1|L5|G|4427
8UJ9|1|L5|A|4428
8UJ9|1|L5|C|4429
8UJ9|1|L5|G|4430
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain LI
- Ribosomal protein uL16-like
- Chain Lm
- Large ribosomal subunit protein eL40
Coloring options: