IL_8UJ9_138

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8UJ9|1|L5|G|4522, 8UJ9|1|L5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_138 not in the Motif Atlas

Homologous match to IL_8P9A_335

Geometric discrepancy: 0.07

The information below is about IL_8P9A_335

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8UJ9|1|L5|C|4456
8UJ9|1|L5|U|4457
8UJ9|1|L5|C|4458
*
8UJ9|1|L5|G|4520
8UJ9|1|L5|U|4521
8UJ9|1|L5|G|4522
8UJ9|1|L5|A|4523
8UJ9|1|L5|G|4524

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23