IL_8UJ9_139

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8UJ9|1|L5|A|4518, 8UJ9|1|L5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_139 not in the Motif Atlas

Homologous match to IL_8CRE_117

Geometric discrepancy: 0.098

The information below is about IL_8CRE_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8UJ9|1|L5|C|4458
8UJ9|1|L5|U|4459
*
8UJ9|1|L5|A|4517
8UJ9|1|L5|A|4518
8UJ9|1|L5|C|4519
8UJ9|1|L5|G|4520

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23