IL_8UJ9_157

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

8UJ9|1|L5|C|4757, 8UJ9|1|L5|U|4758, 8UJ9|1|L5|A|4764, 8UJ9|1|L5|G|4870, 8UJ9|1|L5|C|4871, 8UJ9|1|L5|G|4873, 8UJ9|1|L5|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJ9|1|L5|C|4756
8UJ9|1|L5|C|4757
8UJ9|1|L5|U|4758
8UJ9|1|L5|C|4759
8UJ9|1|L5|G|4760
8UJ9|1|L5|G|4761
8UJ9|1|L5|A|4762
8UJ9|1|L5|U|4763
8UJ9|1|L5|A|4764
8UJ9|1|L5|G|4765
*
8UJ9|1|L5|U|4869
8UJ9|1|L5|G|4870
8UJ9|1|L5|C|4871
8UJ9|1|L5|G|4872
8UJ9|1|L5|G|4873
8UJ9|1|L5|A|4874
8UJ9|1|L5|G|4875
8UJ9|1|L5|U|4876
8UJ9|1|L5|G|4877

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a