IL_8UJ9_159

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_159 not in the Motif Atlas

Geometric match to IL_4WF9_089

Geometric discrepancy: 0.3882

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8UJ9|1|L5|C|4774
8UJ9|1|L5|C|4775
8UJ9|1|L5|G|4776
*
8UJ9|1|L5|C|4859
8UJ9|1|L5|G|4860

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a