IL_8UJ9_171

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

8UJ9|1|L7|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_171 not in the Motif Atlas

Homologous match to IL_8OI5_134

Geometric discrepancy: 0.174

The information below is about IL_8OI5_134

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8UJ9|1|L7|C|15
8UJ9|1|L7|A|16
*
8UJ9|1|L7|U|62
8UJ9|1|L7|C|63
8UJ9|1|L7|G|64

Current chains

Chain L7

5S rRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like

Chain LJ

60S ribosomal protein L11